{"id":33278,"date":"2025-03-11T20:51:04","date_gmt":"2025-03-11T19:51:04","guid":{"rendered":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/?page_id=33278"},"modified":"2026-04-08T09:25:06","modified_gmt":"2026-04-08T07:25:06","slug":"publications-2025","status":"publish","type":"page","link":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/publications-2025\/","title":{"rendered":"Publications\u00a0\u00a02025"},"content":{"rendered":"

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1. Ainatzi S, Kaufmann SV, Silbern I, Georgiev SV, Lorenz S, Rizzoli SO, Urlaub H.<\/p>\n
Ca2+<\/sup>-triggered (de)ubiquitination events in synapses<\/a><\/p>\n
Mol Cell Proteomics. 2025 Mar 13:100946. doi: 10.1016\/j.mcpro.2025.100946. Online ahead of print.<\/div>\n<\/div>\n<\/div>\n
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2. Atoui A, Kaiser J, Billaudelle S, Spilger P, M\u00fcller E, Luboeinski L, Tetzlaff C, Schemmel J.<\/p>\n
Multi-timescale synaptic plasticity on analog neuromorphic hardware<\/a><\/p>\n
2025 Neuro Inspired Computational Elements (NICE), Heidelberg, Germany, 2025, pp. 1-9,
\ndoi: 10.1109\/NICE65350.2025.11065914.<\/div>\n<\/div>\n<\/div>\n
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3. Becker M, Safari N, Tetzlaff C.<\/p>\n
The Brownian dynamics simulator PyRID for reacting
\nand interacting particles written in Python<\/a><\/p>\n
Cell Rep Methods. 2025 Oct 20;5(10):101182. doi: 10.1016\/j.crmeth.2025.101182. Epub 2025 Sep 18.<\/div>\n<\/div>\n<\/div>\n
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4. Bergmann C, Mousaei K, Rizzoli SO, Tchumatchenko T.<\/p>\n
How energy determines spatial localisation
\nand copy number of molecules in neurons<\/a><\/p>\n
Nat Commun. 2025 Feb 7;16(1):1424. doi: 10.1038\/s41467-025-56640-0.<\/div>\n<\/div>\n<\/div>\n
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5. Bogaciu CA, Rizzoli SO.<\/p>\n
Membrane trafficking of synaptic adhesion molecules<\/a><\/p>\n
J Physiol. 2025 Oct;603(20):5921-5934. doi: 10.1113\/JP286401. Epub 2024 Sep 25.<\/div>\n<\/div>\n<\/div>\n
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6. Caterino C, Ugolini M, Durso W, Jevdokimenko K, Groth M, Riege K, G\u00f6rlach M, Fornasiero E,
\nOri A, Hoffmann S, Cellerino A.<\/p>\n
Translational Remodeling of the Synaptic Proteome During Aging<\/a><\/p>\n
Aging Cell. 2025 Dec;24(12):e70262. doi: 10.1111\/acel.70262. Epub 2025 Oct 16.<\/div>\n<\/div>\n<\/div>\n
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7. Chhabra A, Hoffmann C, Aguilar P\u00e9rez G, Korobeinikov AA, Rentsch J, H\u00fcmpfer N, Kokwaro L,
\nGnidovec L, Petrovi\u0107 A, Wallace JN, Tromm JV, Rom\u00e1n-Vendrell C, Johnson EC, Rankovi\u0107 B, Perego E,
\nVolpi T, Fern\u00e1ndez-Busnadiego R, K\u00f6ster S, Rizzoli SO, Ewers H, Morgan JR, Milovanovi\u0107 D.<\/p>\n
Condensates of synaptic vesicles and synapsin-1 mediate actin sequestering and polymerization<\/a><\/p>\n
EMBO J. 2025 Sep;44(18):5112-5148. doi: 10.1038\/s44318-025-00516-y. Epub 2025 Aug 14.<\/div>\n<\/div>\n<\/div>\n
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8. Chouaib AA, Chang HF, Khamis OM, Alawar N, Echeverry S, Demeersseman L, Elizarova S,
\nDaniel JA, Tian Q, Lipp P, Fornasiero EF, Valitutti S, Barg S, Pape C, Shaib AH, Becherer U.<\/p>\n
Highly adaptable deep-learning platform for automated detection
\nand analysis of vesicle exocytosis<\/a><\/p>\n
Nat Commun. 2025 Jul 12;16(1):6450. doi: 10.1038\/s41467-025-61579-3.<\/div>\n<\/div>\n<\/div>\n
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9. Chowdhury R, Krah D, Ntolkeras A, Heimbrodt A, Shaib AH.<\/p>\n
High Precision Antibody-Free Microtubule Labeling
\nfor Expansion Microscopy<\/a><\/p>\n
Bio Protoc. 2025 Dec 20;15(24):e5539. doi: 10.21769\/BioProtoc.5539.<\/div>\n<\/div>\n<\/div>\n
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10. Chowdhury R, Mimoso T, Chouaib AA, Mougios N, Krah D, Opazo F,
\nK\u00f6ster S, Rizzoli SO, Shaib AH.<\/p>\n
Microtubules as a versatile reference standard
\nfor expansion microscopy<\/a><\/p>\n
Commun Biol. 2025 Mar 26;8(1):499. doi: 10.1038\/s42003-025-07967-3.<\/div>\n<\/div>\n<\/div>\n
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11. Dannenberg S, Reshetniak S, Mohammadinejad S, Rizzoli SO, Klumpp, S.<\/p>\n
Geometry effects on protein mobility in a synapse<\/a><\/p>\n
Biophys J. 2025 Aug 8:S0006-3495(25)00500-4. doi: 10.1016\/j.bpj.2025.08.007. Online ahead of print.<\/div>\n<\/div>\n<\/div>\n
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12. Di Fraia D, Marino A, Lee JH, Kelmer Sacramento E, Baumgart M, Bagnoli S, Balla T,
\nSchalk F, Kamrad S, Guan R, Caterino C, Giannuzzi C, Tomaz da Silva P, Sahu AK, Gut H,
\nSiano G, Tiessen M, Terzibasi-Tozzini E, Fornasiero EF, Gagneur J, Englert C, Patil KR,
\nCorreia-Melo C, Nedialkova DD, Frydman J, Cellerino A, Ori A.<\/p>\n
Altered translation elongation contributes to key hallmarks
\nof aging in the killifish brain<\/a><\/p>\n
Science. 2025 Jul 31;389(6759):eadk3079. doi: 10.1126\/science.adk3079. Epub 2025 Jul 31.<\/div>\n<\/div>\n<\/div>\n
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13. Fries LM, Montrazi ET, Allouche-Arnon H, Opazo F, Bar-Shir A, Frydman L, Gl\u00f6ggler S.<\/p>\n
Deuterated Nanopolymers for Renal and Lymphatic Imaging
\nvia Quantitative Deuterium MRI<\/a><\/p>\n
Nano Lett. 2025 Feb 5;25(5):1758-1764. doi: 10.1021\/acs.nanolett.4c03036. Epub 2025 Jan 22.<\/div>\n<\/div>\n<\/div>\n
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14. Gallimore AR, Hepburn I, Georgiev SV, Rizzoli SO, De Schutter E.<\/p>\n
Dynamic regulation of vesicle pools in a detailed spatial model
\nof the complete synaptic vesicle cycle<\/a><\/p>\n
Sci Adv. 2025 May 30;11(22):eadq6477. doi: 10.1126\/sciadv.adq6477. Epub 2025 May 28.<\/div>\n<\/div>\n<\/div>\n
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15. Georgiev SV, Rizzoli SO.<\/p>\n
PHluorin-conjugated secondary nanobodies as a tool for
\nmeasuring synaptic vesicle exocytosis and endocytosis<\/a><\/p>\n
Sci Rep. 2025 Mar 24;15(1):10093. doi: 10.1038\/s41598-025-92703-4.<\/div>\n<\/div>\n<\/div>\n
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16. Hemandhar-Kumar N, Kluever V, Kaufmann SV, Bergmann C, Mousaei K, Tomas M,
\nMarrero MC, Chopra A, Hirose M, Pallas M, Sanfeliu C, Ibrahim SM, Fischer A, Outeiro TF,
\nUrlaub H, Tchumatchenko T, Lopez Otin C, Fornasiero EF.<\/p>\n
Proteo-transcriptomic reprogramming and resource reallocation
\ndefine the aging mammalian brain<\/a><\/p>\n
bioRxiv 2025.08.14.669896. doi: 10.1101\/2025.08.14.669896.<\/div>\n<\/div>\n<\/div>\n
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17. Hofmann M, Becker MFP, Tetzlaff C, M\u00e4der P.<\/p>\n
Concept transfer of synaptic diversity from biological
\nto artificial neural networks<\/a><\/p>\n
Nat Commun. 2025 Jun 2;16(1):5112. doi: 10.1038\/s41467-025-60078-9.<\/div>\n<\/div>\n<\/div>\n
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18. Kowald M, Bachollet, Benseler F, Steinecker M, Boll M, Kaushik,
\nSoykan T, Sun S, Birke R, Ilic D, Brose N, H\u00f6rnberg H, Lehmann M,
\nRizzoli SO, Broichhagen J, Lipstein N.<\/p>\n
Endogenous SNAP-Tagging of Munc13\u20111 for
\nMonitoring Synapse Nanoarchitecture<\/a><\/p>\n
JACS Au. 2025 May 23;5(6):2475-2490. doi: 10.1021\/jacsau.4c00946.
\neCollection 2025 Jun 23.<\/div>\n<\/div>\n<\/div>\n
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19. Lehr AB, Kumar A, Tetzlaff C.<\/p>\n
Spatially heterogeneous inhibition projects sequential activity
\nonto unique neural subspaces<\/a><\/p>\n
eLife. 2025 Nov 20. doi.org\/10.7554\/eLife.108375.<\/div>\n<\/div>\n<\/div>\n
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20. Li W, Dasgupta A, Yang K, Wang S, Hemandhar-Kumar N, Chepyala SR,
\nYarbro JM, Hu Z, Salovska B, Fornasiero EF, Peng J, Liu Y.<\/p>\n
Turnover atlas of proteome and phosphoproteome
\nacross mouse tissues and brain regions<\/a><\/p>\n
Cell. 2025 Apr 17;188(8):2267-2287.e21. doi: 10.1016\/j.cell.2025.02.021. Epub 2025 Mar 20.<\/div>\n<\/div>\n<\/div>\n
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21. Markusson S,\u00a0Raasakka A, Schr\u00f6der M, Sograte-Idrissi S, Mohammad Rahimi A,
\nAsadpour O, K\u00f6rner H, Lodygin D,\u00a0Eichel-Vogel MA,\u00a0Chowdhury R,\u00a0Sutinen A,
\nMuruganandam G, Iyer M, Cooper MH,\u00a0Weigel MK, Ambiel N,\u00a0Werner HB,\u00a0Zuchero JB,
\nOpazo F,\u00a0Kursula P.<\/p>\n
Nanobodies against the myelin enzyme CNPase as tools
\nfor structural and functional studies<\/a><\/p>\n
J Neurochem. 2025 Jan;169(1):e16274. doi: 10.1111\/jnc.16274.<\/div>\n<\/div>\n<\/div>\n
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22. Mikulasch FA, Georgiev SV, Rudelt L, Rizzoli SO, Priesemann V.<\/p>\n
Power-law adaptation in the presynaptic vesicle cycle<\/a><\/p>\n
Commun Biol. 2025 Apr 2;8(1):542. doi: 10.1038\/s42003-025-07956-6.<\/div>\n<\/div>\n<\/div>\n
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23. Mimoso T, Korobeinikov A, Stein A, Milovanovic D, Rizzoli SO, K\u00f6ster S, Reshetniak S.<\/p>\n
Brain-derived synaptic vesicles have an intrinsic ability
\nto sequester tubulin<\/a><\/p>\n
BMC Biol. 2025 Nov 14;23(1):340. doi: 10.1186\/s12915-025-02464-9.<\/div>\n<\/div>\n<\/div>\n
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24. Mohar B, Michel G, Wang YZ, Hernandez V, Grimm JB, Park JY, Patel R, Clarke M,
\nBrown TA, Bergmann C, Gebis KK, Wilen AP, Liu B, Johnson R, Graves A, Tchumatchenko T,
\nSavas JN, Fornasiero EF, Huganir RL, Tillberg PW, Lavis LD, Svoboda K, Spruston N.<\/p>\n
DELTA: a method for brain-wide measurement of synaptic
\nprotein turnover reveals localized plasticity during learning<\/a><\/p>\n
Nat Neurosci. 2025 May;28(5):1089-1098. doi: 10.1038\/s41593-025-01923-4. Epub 2025 Mar 31.<\/div>\n<\/div>\n<\/div>\n
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25. Muth S, Moschref F, Freckmann L, Mutschall S, Hojas-Garcia-Plaza I, Bahr JN, Petrovic A,
\nDo TT, Schwarze V, Archit A, Weyand K, Michanski S, Maus L, Imig C, Hintze A, Brose N,
\nWichmann C, Fernandez-Busnadiego R, Moser T, Rizzoli SO, Cooper BH, Pape C.<\/p>\n
SynapseNet: Deep Learning for Automatic Synapse Reconstruction<\/a><\/p>\n
Mol Biol Cell. 2025 Aug 28:mbcE24110519. doi: 10.1091\/mbc.E24-11-0519. Online ahead of print.<\/div>\n<\/div>\n<\/div>\n
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26. Pronto JRD, Mason FE, Rog-Zielinska EA, Fakuade FE, B\u00fclow D, T\u00f3th M, Machwart K, Brandes P,
\nWiedmann F, Kohlhaas M, Nickel A, Wolf M, Mustroph J, Vu KC, Brandenburg S, Do TQ, Siedler PJ,
\nRitzenhoff K, Xue Z, Zhou X, Kestel S, Dschun O, Kyshynska O, Kensah G, Rebbeck RT, El-Essawi A,
\nJebran AF, Danner BC, Baraki H, Schredelseker J, Bogeski I, Brundel BJJM, Lehnart SE, Bening C,
\nKutschka I, Bremmer F, Kallenberger SM, Rizzoli SO, Knollmann BC, Neef S, Streckfuss-B\u00f6meke K,
\nSchmidt C, Maack C, Voigt N.<\/p>\n
Impaired Atrial Mitochondrial Calcium Handling in Patients With Atrial Fibrillation<\/a><\/p>\n
Circ Res. 2025 Nov 7;137(11):1333-1352. doi: 10.1161\/CIRCRESAHA.124.325658. Epub 2025 Oct 15.<\/div>\n<\/div>\n<\/div>\n
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27. Reshetniak S, Bogaciu CA, Bonn S, Brose N, Cooper BH, D’Este E, Fauth M, Fern\u00e1ndez-Busnadiego R,
\nFiosins M, Fischer A, Georgiev SV, Jakobs S, Klumpp S, K\u00f6ster S, Lange F, Lipstein N, Macarr\u00f3n-Palacios V, Milovanovic D, Moser T, M\u00fcller M, Opazo F, Outeiro TF, Pape C, Priesemann V, Rehling P, Salditt T, Schl\u00fcter O, Simeth N, Steinem C, Tchumatchenko T, Tetzlaff C, Tirard M, Urlaub H, Wichmann C, Wolf F, Rizzoli SO.<\/p>\n
The synaptic vesicle cluster as a controller of pre- and postsynaptic
\nstructure and function<\/a><\/p>\n
J Physiol. 2025 Oct;603(20):5935-5964. doi: 10.1113\/JP286400. Epub 2024 Oct 5.<\/div>\n<\/div>\n<\/div>\n
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28. Sakthivelu V, Schmitt A, Odenthal F, Ndoci K, Touet M, Shaib AH, Chihab A, Wani GA, Nieper P,
\nHartmann GG, Pintelon I, Kisis I, Boecker M, Eckert NM, Iannicelli Caiaffa M, Ibruli O, Weber J,
\nMaresch R, Bebber CM, Chitsaz A, L\u00fctz A, Kim Alves Carpinteiro M, Morris KM, Franchino CA,
\nBenz J, P\u00e9rez-Revuelta L, Soriano-Campos JA, Huetzen MA, Goergens J, Jevtic M, Jahn-Kelleter HM,
\nZempel H, Placzek A, Hennrich AA, Conzelmann KK, Tumbrink HL, Hunold P, Isensee J, Werr L,
\nGaedke F, Schauss A, Min\u00e8re M, M\u00fcller M, Fenselau H, Liu Y, Heimsoeth A, G\u00fclc\u00fcler Balta GS,
\nWalczak H, Frezza C, Jachimowicz RD, George J, Schmiel M, Br\u00e4gelmann J, Hucho T, von Karstedt S,
\nPeifer M, Annibaldi A, H\u00e4nsel-Hertsch R, Persigehl T, Gr\u00fcll H, Sos ML, Reifenberger G, Fischer M,
\nAdriaensen D, B\u00fcttner R, Sage J, Brouns I, Rad R, Thomas RK, Anst\u00f6tz M, Rizzoli SO, Bergami M,
\nMotori E, Reinhardt HC, Beleggia F.<\/p>\n
Functional synapses between neurons and small cell lung cancer<\/a><\/p>\n
Nature. 2025 Oct;646(8086):E17. doi: 10.1038\/s41586-025-09638-z.<\/div>\n<\/div>\n<\/div>\n
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29. Santos PI, Garc\u00eda-Plaza IH, Shaib A, Rhee JS, Chouaib AA, Brose N, Rizzoli SO, Daniel J, Outeiro TF.<\/p>\n
Glutamatergic synaptic resilience to overexpressed human alpha-synuclein<\/a><\/p>\n
NPJ Parkinsons Dis. 2025 Aug 12;11(1):238. doi: 10.1038\/s41531-025-01085-x.<\/div>\n<\/div>\n<\/div>\n
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30. Shaib AH, Chouaib AA, Chowdhury R, Altendorf J, Mihaylov D, Zhang C, Krah D, Imani V, Spencer RKW,
\nGeorgiev SV, Mougios N, Monga M, Reshetniak S, Mimoso T, Chen H, Fatehbasharzad P, Crzan D, Saal KA,
\nAlawieh MM, Alawar N, Eilts J, Kang J, Soleimani A, M\u00fcller M, Pape C, Alvarez L, Trenkwalder C, Mollenhauer B, Outeiro TF, K\u00f6ster S, Preobraschenski J, Becherer U, Moser T, Boyden ES, Aricescu AR, Sauer M,
\nOpazo F, Rizzoli SO<\/p>\n
One-step nanoscale expansion microscopy reveals individual protein shapes<\/a><\/p>\n
Nat Biotechnol. 2025 Sep;43(9):1539-1547. doi: 10.1038\/s41587-024-02431-9. Epub 2024 Oct 9.<\/div>\n<\/div>\n<\/div>\n
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31. Torres J, Vural Z, Fiosins M, Schwarze V, Hojas-Garc\u00eda-Plaza I, Benseler F, Bonn S, Rizzoli SO, Cooper BH,
\nRhee J, Brose N, Tirard M.<\/p>\n
Neddylation regulates the development and function of glutamatergic neurons<\/a><\/p>\n
Commun Biol. 2025 Sep 9;8(1):1338. doi: 10.1038\/s42003-025-08680-x.<\/div>\n<\/div>\n<\/div>\n
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32. Unterauer EM, Schentarra EM, Pachmayr I, Tashrin T, Kwon J, Strauss S, Jevdokimenko K,
\nKowalewski R, Opazo F, Fornasiero EF, Masullo LA, Jungmann R.<\/p>\n
Left-handed DNA for efficient highly multiplexed imaging
\nat single-protein resolution<\/a><\/p>\n
Nat Commun. 2025 Oct 2;16(1):8773. doi: 10.1038\/s41467-025-64228-x.<\/div>\n<\/div>\n<\/div>\n
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33. Unterauer EM, Schentarra EM, Jevdokimenko K, Boushehri SS, Marr C, Opazo F,
\nFornasiero EF, Jungmann R.<\/p>\n
Protocol for SUM-PAINT spatial proteomic imaging generating
\nneuronal architecture maps in rat hippocampal neurons<\/a><\/p>\n
STAR Protoc. 2025 Mar 21;6(1):103637. doi: 10.1016\/j.xpro.2025.103637. Epub 2025 Mar 5.<\/div>\n<\/div>\n<\/div>\n
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34. von Seeler O, Offenberg EC, Michaelis C, Luboeinski, Lehr AB, Tetzlaff C.<\/p>\n
Adding numbers with spiking neural circuits on neuromorphic hardware:
\na building block for future hybrid systems<\/a><\/p>\n
2025 Neuromorph. Comput. Eng. 5 047001. doi: 10.1088\/2634-4386\/ae0c91<\/div>\n<\/div>\n<\/div>\n
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35. St\u00f6ber TM, Lehr AB, Nikzad A, Ganjtabesh M, Fyhn M, Kumar A.<\/p>\n
Competition and cooperation of assembly sequences
\nin recurrent neural networks<\/a><\/p>\n
Published: September 12, 2025. doi: 10.1371\/journal.pcbi.1013403<\/div>\n<\/div>\n<\/div>\n
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36. Woeste H, van Agen L, M\u00fcller M.<\/p>\n
Mapping of neuronal redox conditions
\nin a mouse model of Rett syndrome<\/a><\/p>\n
NeuroImage: Reports. 2025 Dec; doi: 10.1016\/j.ynirp.2025.100297.\n<\/div>\n<\/div>\n<\/div>\n
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37. Yilmaz E, Rahimi A, M\u00fcnchhalfen M, Alevra M, Golmohammadi A, Tetzlaff C, Opazo F, Engels N.<\/p>\n
Immunoglobulin divalence promotes B-cell antigen receptor cluster
\nscale-dependent functions<\/a><\/p>\n
Cell Mol Immunol. 2025 Sep;22(9):1093-1108. doi: 10.1038\/s41423-025-01327-1. Epub 2025 Aug 6.\n<\/div>\n<\/div>\n<\/div>\n
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        1. Ainatzi S, Kaufmann SV, Silbern I, Georgiev SV, Lorenz S, Rizzoli SO, Urlaub H. Ca2+-triggered (de)ubiquitination events in synapses Mol Cell Proteomics. 2025 Mar 13:100946. doi: 10.1016\/j.mcpro.2025.100946. Online ahead of print.       2. Atoui A, Kaiser J, Billaudelle S, Spilger P, M\u00fcller E, Luboeinski L, Tetzlaff C, Schemmel … <\/p>\n

\u201ePublications\u00a0\u00a02025\u201c <\/span>weiterlesen<\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-33278","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/pages\/33278","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/comments?post=33278"}],"version-history":[{"count":0,"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/pages\/33278\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.neuro-physiol.med.uni-goettingen.de\/wordpress\/wp-json\/wp\/v2\/media?parent=33278"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}